PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G149000.2.p
Common NameSb01g012970, SORBIDRAFT_01g012970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 1078aa    MW: 116787 Da    PI: 5.3161
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G149000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.14.6e-3188191291
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkw 76 
                           fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+                + rrtra+tr+gCka+++vkk+++g+w
  Sobic.001G149000.2.p  88 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevsradavdpgdddGGRGRRTRAVTRVGCKAMIRVKKQDNGRW 176
                           **********************************************************998999************************* PP

                  FAR1  77 evtkleleHnHelap 91 
                            vtkle+ HnH+l+p
  Sobic.001G149000.2.p 177 SVTKLETAHNHPLVP 191
                           ************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-2988191IPR004330FAR1 DNA binding domain
PfamPF105518.4E-20310399IPR018289MULE transposase domain
PfamPF044343.8E-9583620IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.744585623IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-7598625IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MDMERGAGSE QGSPDSEMGD GDNDSVGYGA EMEVDAGSGS AGASAPASSA SASASVSASA  60
YAARAGAYDG VDPFEGMEFD DEEDAWTFYN VYAHRVGFST RISVMHRSRR DGSVMSRQFV  120
CAKEGFRTYR GKNEVSRADA VDPGDDDGGR GRRTRAVTRV GCKAMIRVKK QDNGRWSVTK  180
LETAHNHPLV PANQAHCLRP HKPLSECGKQ RPFGGHRNGG SLLAIEPPPP PLTPPVPHTS  240
IPQVVPQYVS DGIGNGTRVI LDYVKRMQAE DPAFFYAMQF VEGRPVGNVF WADARARTAY  300
KDFGDAVVLD DYCKRSKHEL PLVAFTGVNH HCQPVLFGCA IMAHNNEASF IWLFETFLLA  360
MSGQQPTSLT MEHDNALKSA ALKVFPLTRL QFCKWHIMNE AQDKLSYLLD AFPSFHEDFI  420
NCVNMSDTIN EFETNWKALI SKVSSQKTEW LDLVYNCRHQ WVPVYLRDTF FGDVSLKLQC  480
SSRSSLFEGY ISAKTDSQSF IQQYEKALDC CYEKEVKEEF ETKYSLPDIK TPSPIEKQGA  540
ELYTRSMFLK FQQELIDASV YTAEMVKEVG NASVYTVTRS EGSEKSVTVE FSSSGSSATC  600
SCRMFEYFGI VCRHILTVFG VRGVSALPSH YFVKRWTKNA LDRSSGKNVD EVSRVEEPKE  660
EQRSSAEDDE QSLTWRYNSL CREALRYAEE GASSLEVYIV AMQALQEAAN RVNMAKRGIG  720
QVAPLAVMPI AAQPPESFAR NQGIISNKQK KRKRNSNSSR ENATSNQLMY VQQPVNFLFV  780
APGPGSSSAL QGPSQLVAAA PVSLSSKYGQ TSGANNSVDD NIPPASVVDK FSGLPDRNAS  840
APSTGNLQGG ETKSIGADLR IKESHELSQA NGSRGCSVNT LNSSAVPQLV TVPIGLCLPS  900
TDASKISAAG MNSVNSGDIS SNGKLSFGQS QSSAQQPATP SQTKTLDRID SRANPEGSSI  960
RAAAIAAGAR IASPSDAATI IKAAQSKGAI HIRPGENLPN YLKPLAPKPL SSLPPVNPLS  1020
SAHASPGQHS FGDSAAAKDA IFGSSDGSDD DEEDTDDEED TDDDEDEGLT GDDAEHE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662010.0AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466727.10.0hypothetical protein SORBIDRAFT_01g012970
TrEMBLC5WQH00.0C5WQH0_SORBI; Putative uncharacterized protein Sb01g012970
STRINGSb01g012970.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-163FAR1-related sequence 5